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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG

Basic information

species Glycine max
transcript GLYMA02G11530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G127948_T04 (Zea mays), 3'ss of exon 6
-taaaaaaaatgcaagtttttccatc---actcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG------------------------------------------------
 ||  |||    || |       |||    ||   |     ||| || ||  ||  ||      | | |  |  | ||   ||  |  || ||       ||||||||||||||| |||   |  |||||| |||| |||||||| ||||||||||||||||||||||||||| || || || |  |||| || ||  | || |                                                
gtacgaaatggccaggccgccagatctgtgcttcttcgcctata-tcgatcgagtagaa-gttgacatgacatctcggacccgtgtctgtctgcatctgcgcaggagaagaaccacgggtcgttcgacttcgtcttcgtggacgccgacaagGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAAGCTGGGCGGCCTCATCGGCTACGACAACACGCTGTGGAACGGCTCCGTCGTGCTCC

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G127948_T02 (Zea mays), 3'ss of exon 5
-taaaaaaaatgcaagtttttccatc---actcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
 ||  |||    || |       |||    ||   |     ||| || ||  ||  ||      | | |  |  | ||   ||  |  || ||       ||||||||||||||| |||   |  |||||| |||| |||||||| ||||||||||||||||||||||||||| || || || |  |||| || ||  | || |
gtacgaaatggccaggccgccagatctgtgcttcttcgcctata-tcgatcgagtagaa-gttgacatgacatctcggacccgtgtctgtctgcatctgcgcagGAGAAGAACCACGGGTCGTTCGACTTCGTCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGCTGAAGCTGGTGAAGCTGGGCG

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34050.2 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------------------taaaaaaaatg--caagtttttccatca----ctcaataaaaaataatcaatttagaggagta-aaaagagggta-attgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
                                                                          |||  |   ||    | | | |  || |     ||  || |    |||   |||        | | ||||  ||    |   |    |||| |||||||    ||||||||||||||||||| |  |||||||| || || || || || ||||| ||||||||| |||||||||||||| | ||||| || ||||| ||| |||| |
gtaagcattcttctttctgacgtaattaacaaaaaagatgatgaagataatgaaataattaaaaactcatggcctaattaggttgatttaatatcttgatgagaatttctgtatacgcaaatttgtttcctttttcatagaagaaagtgtggtaactgattattgtgtgtggttgggtgcagGAGAAGAACCATGGAACATATGACTTTATATTCGTTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAATTGGAG

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0063g00140.t01 (Vitis vinifera), 3'ss of exon 4
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagagga--gtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
     ||  | ||       ||||||  ||| | |   || | || |   |  |   |  ||| | | ||||||  |     || | |||| |||||  |||| |||| | || |||   |  |||||||| || |||||||||||||||||||| || || |||||||||||||| ||||| ||  | || || || ||||
---gtaagcttcacaaaaacccatcatccaa-acattgtatttaaatccaaacatgattgaaacaagctaattgact--ttgtttc-tgtgatgaaaaacagGGGAAGTATCACGGGTCGTTCGACTTCATATTCGTGGACGCAGACAAGGACAATTATCTGAACTACCACAAGAGATTGATCGATTTGGTGAAGGTGGGGG

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S16_28V6.1 (Physcomitrella patens), 3'ss of exon 4
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatt-tagaggagtaaaaa-gagggtaattgggtagcgattgcgtgtggtgaaatg-cagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
  ||  || || |||    |  |          ||| | || || || | ||   ||  |   ||||  || |    |  ||||||       ||| || ||||| ||||| || |     |  ||||||||||| || ||||| ||||| |||||||| || ||||||||||||| | | ||  || | || |  || || |
-caaggaagtgtaagaagctgtacagggtgtggaaagaaaaacagttattgacctgtctatgtgaggccaactcatca--gattgcaaacttggaattggcagGACAAGAATCACGATTCTTTCGACTTCATCTTCGTAGACGCGGACAAAGACAACTATCTGAACTACCACAAGAAGCTCATGAAGTTGGTGAGGGTGGGAG

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ22516 (Selaginella moellendorffii), 3'ss of exon 4
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
                      | |  |||||| ||  |  ||  | |       | ||   | |  |||  | |  |  || | |          |||||||  ||| |||||    |  ||||||||||||||||| || ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |
-------------------gtaagctttcaatacaacttt-tctttatcttaccttgaaccaacgacaat--gctgacactttcct---------cgcagGAGGCGAATCATGGCGCATTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

upper sequence: GLYMA02G11530.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
                      | |  |||||| ||  |  ||  | |       | ||   | |  |||  | |  |  || | |          |||||||  ||| |||||    |  ||||||||||||||||| || ||||||||||| ||| | ||||||||||||||||||||     | || ||||| || |
-------------------gtaagctttcaatacaacttt-tctttatcttaccttgaaccaacgacaat--gctgacactttcct---------cgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936522|gb|BQ080903.1|BQ080903
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACCAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|308098994|gb|HO760835.1|HO760835
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|18733711|gb|BM527768.1|BM527768
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|58023862|gb|CX710603.1|CX710603
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192325510|gb|FK018421.1|FK018421
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|120494964|gb|EH223131.1|EH223131
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|6951934|gb|AW424002.1|AW424002
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|7591492|gb|AW707224.1|AW707224
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCGGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|6072966|gb|AW102353.1|AW102353
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192333796|gb|FK025841.1|FK025841
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|17401035|gb|BM177817.1|BM177817
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCGGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|12690365|gb|BG156701.1|BG156701
EST:     GAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: GAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|15201563|gb|BI424930.1|BI424930
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAG
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAG
EST: gi|5678050|gb|AI939180.1|AI939180
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192334595|gb|FK025842.1|FK025842
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|19936001|gb|BQ080677.1|BQ080677
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192294152|gb|FG986241.1|FG986241
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|120494829|gb|EH222996.1|EH222996
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|7588790|gb|AW704578.1|AW704578
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCGGACAAAGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|5677754|gb|AI938893.1|AI938893
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGCTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACTAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|21601527|gb|BQ611858.1|BQ611858
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|151393914|gb|EV263785.1|EV263785
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|14991940|gb|BI317613.1|BI317613
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCGGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192325368|gb|FK018354.1|FK018354
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|120493137|gb|EH221304.1|EH221304
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|9258911|gb|BE347058.1|BE347058
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|17402133|gb|BM178915.1|BM178915
EST:     AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCGGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|15813375|gb|BI785650.1|BI785650
EST:     TTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: TTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
EST: gi|192304327|gb|FG996453.1|FG996453
EST:     AATTCAGAAAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGAT                         GAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC
genomic: AATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATgtaagttttt ... tgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG
        agtaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaaaaaatgcaagtttttccatcactcaataaaaaataatcaatttagaggagtaaaaagagggtaattgggtagcgattgcgtgtggtgaaatgcagGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
-aaaaaaa
- -aaaaaat
- - - - -tgcaagt
- - - - - - - - - - ccatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgt