1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacccattttaccctttttatttttatttcctatttcaattttcttgagttatatgccctcaatcatggtctctaagttttttttttttgtcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTTCACAAGCAGGCTCTTTATTTCTTGTGGGGAACATTTTTGTGCAGCCAC
species | Glycine max |
transcript | GLYMA02G10940.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTEST: gi|17519036|gb|BM188078.1|BM188078
genomic: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGT
EST: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTEST: gi|15199474|gb|BI423849.1|BI423849
genomic: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGT
EST: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTEST: gi|254346076|gb|GR859689.1|GR859689
genomic: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGT
EST: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAG AAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGT
genomic: TAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttg ... tcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGT
tgagttatatgccctcaatcatggtctctaagttttttttttttgtcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTTCACAAGCAGGCTCTTTATTTCTTGTGGGGAACATTTTTGTGCAGCCAC
tctctaagtttttttt CT-rich tract
taagtttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacccattttaccctttttatttttatttcctatttcaattttcttgagttatatgccctcaatcatggtctctaagttttttttttttgtcttctacagAAATTTCGTCTTCACACTAGAAGAAGCCCCATAATCCACAACAGTGCAAGTTCACAAGCAGGCTCTTTATTTCTTGTGGGGAACATTTTTGTGCAGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggtc