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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttcaattgtttctattgtttttttgttttcaaagtcattctggtgttttcacttgtcaaaccccttctttaactgattattttttttcctttttatagTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTG

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320748|gb|GR827197.1|GR827197
EST:     GTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAG                         TTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTT
genomic: GTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGgtatgcattt ... ctttttatagTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTT
EST: gi|254333563|gb|GR848481.1|GR848481
EST:     GTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAG                         TTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTT
genomic: GTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGgtatgcattt ... ctttttatagTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcacttgtcaaaccccttctttaactgattattttttttcctttttatagTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTG
                           aactgat  putative branch site (score: 3)
                 ccccttctttaactga  CT-rich tract
                        tttaactgattatttt  TA-rich tract