Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG

Basic information

species Glycine max
transcript GLYMA02G10170.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttctcttcattttttttcctgcttcttggaatgttatgtta-tcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG---
    |||  |||| ||| |        || |  |    | ||  ||  |||||       || ||| || || |  |  |||   ||     | |||||||||||||||||||| |||||||| || ||||| || ||||| |||||||| ||||| || || || ||||||  ||||   |   ||||| | || ||||  |      
----gtttgcttcttttctgcaaagatttatatgtgaatgattctaaccgtgaa------tcatctttgatagt--ttctgattggagtgcattttttgagtgcagATGTGGATAGCAAAGGCGGAGTATGATGAGTCTGGGCCATCAATCGTGCATAGGAAATGTTTCTAA-TTGTTC--AAGAATAGGATCATGGAAGAAAGGAAGC

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 5
------------------gtttg---ttctcttcattttttttcctgcttcttggaatgtt-atgttatcgtgagat-acattcttctatgct--aataataatgacac--gaactgttgttttg----agtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                  || ||   | |  ||| | ||||||  |   ||||    | ||  | |  ||    | |  | ||  || | |||  |||  |  ||  |    | | |||   |||     ||||||||||||||||| ||| | || || || || || |||||||||||||||||||| ||||| ||||| |    | ||| | ||    |  ||        | 
gtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtttgtcgaggctgtaatctttctggaatttaatccgtttacttgttgtggtgcagATGTGGATTGCGAAGTCGGAGTACGATGAGTCAGGTCCATCAATTGTGCACAGGAAGTGTTTCTAGAGCAGTGCGACACATCTTTTGCTTTTTTCAGCAC

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S372_38V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttga--gtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAAC----TGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                                       ||   |  |   | | ||||    |     | ||||| | |   | |   ||||    ||  |  || |      |  |  |||  | |||| |||     |||||||||||||| || ||  |||| || ||||| || ||||||||||||||||| || ||||| |||||       ||| |  |  | | |  || || | |      
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagag--gttggttaattc----ggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAGGTAAGATGTATGTACCGCTTGACTTTTTCATGAC----

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttga--gtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                                       ||   |  |   | | ||||    |     | ||||| | |   | |   ||||    ||  |  || |      |  |  |||  | |||| |||     |||||||||||||| || ||  |||| || ||||| || ||||||||||||||||| || ||||| |||||                                   
gtaaactgagtttgcatgatattttctacgttggacgtggtaaatattgaacttcttttcagttagcagtcggaatttgagtatgtttcgagag--gttggttaattc----ggtgtttgcacatattgttctttctgtggtgcagATGTGGATCGCGAAATCAGAGTACGACGAGTCAGGTCCATCAATTGTGCATAGGAAGTGTTTCTAG----------------------------------

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 3
gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                                    |   |    ||  |      | || ||||    ||  |    ||       || ||  |||    ||||||||||||||||||| | || || || || || |||||||| |||||||||||||||||||||||                                   
-----------------------------------gtaccacaacattcttttgctcgtttttct----tatcagccttgttttt--ctttttcttttttcgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 3
gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                                    |   |    ||  |      | || ||||    ||  |    ||        | | ||||     ||||||||||||||||||| | || || || || || |||||||| |||||||||||||||||||||||                                   
-----------------------------------gtaccacaacattcttttgctcgtttttct----tatcagccttgtttttctttttcgtttct--cgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269140|gb|BM885396.1|BM885396
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7284950|gb|AW597437.1|AW597437
EST:     TATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACAAATCTGGTCCATCAATTGTGCAC
genomic: TATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209721508|gb|BW671688.1|BW671688
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7590530|gb|AW706280.1|AW706280
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|31465169|gb|CD407197.1|CD407197
EST:     GTGTTTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCCC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|9901328|gb|BE610296.1|BE610296
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|6963781|gb|AW432474.1|AW432474
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|31456086|gb|CD398114.1|CD398114
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCCAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCCC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|14008893|gb|BG725497.1|BG725497
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|9204410|gb|BE330634.1|BE330634
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|120495751|gb|EH223918.1|EH223918
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|214003968|gb|DB985237.1|DB985237
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7234067|gb|AW569408.1|AW569408
EST:     TGTCTGGGATCG-TGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGC
genomic: TGTCTGG-ATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGC
EST: gi|209701570|gb|BW667350.1|BW667350
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|9259276|gb|BE347484.1|BE347484
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCANAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|214006448|gb|DB990678.1|DB990678
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209715347|gb|BW654234.1|BW654234
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|58014470|gb|CX701212.1|CX701212
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|10238015|gb|BE806903.1|BE806903
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|6848545|gb|AW350835.1|AW350835
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|8669319|gb|BE190426.1|BE190426
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7326742|gb|AW620540.1|AW620540
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|31312087|gb|CD397290.1|CD397290
EST:     GCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7590311|gb|AW706066.1|AW706066
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|31312527|gb|CD397730.1|CD397730
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|13788332|gb|BG650924.1|BG650924
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7590304|gb|AW706060.1|AW706060
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209717613|gb|BW679693.1|BW679693
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|19346912|gb|BM891800.1|BM891800
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|208131347|gb|GD931542.1|GD931542
EST:     TCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: TCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209708353|gb|BW683943.1|BW683943
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|14991157|gb|BI316830.1|BI316830
EST:     TAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: TAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|8669327|gb|BE190434.1|BE190434
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|192321313|gb|FK012074.1|FK012074
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|4396465|gb|AI495462.1|AI495462
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|9440499|gb|BE441002.1|BE441002
EST:     TGTCTGGATTCG-TGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: TGTCTGGAT-CGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209717717|gb|BW671535.1|BW671535
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7925209|gb|AW831235.1|AW831235
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209726934|gb|BW675348.1|BW675348
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|13788364|gb|BG650956.1|BG650956
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209717147|gb|BW657610.1|BW657610
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|18734925|gb|BM528463.1|BM528463
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209717796|gb|BW668933.1|BW668933
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|10848139|gb|BF070687.1|BF070687
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209709918|gb|BW657291.1|BW657291
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|7692949|gb|AW761048.1|AW761048
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209700255|gb|BW664480.1|BW664480
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209713683|gb|BW679384.1|BW679384
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|6072226|gb|AW101613.1|AW101613
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|209711605|gb|BW671316.1|BW671316
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|13251868|gb|BG362771.1|BG362771
EST:     GTGTCTGGATCCGTGGTTCTATCTTGGCATCTCTTATCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|193423677|gb|FK388448.1|FK388448
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|14125156|gb|BG789594.1|BG789594
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|16995605|gb|BM084977.1|BM084977
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
EST: gi|18732788|gb|BM527248.1|BM527248
EST:     GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAG                         ATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC
genomic: GTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGgtttgttctc ... ttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG
                tgctaat  putative branch site (score: 2)
                                        ttgtttt  putative PPT
              tatgctaataataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttctcttcattttttttcctgcttcttggaatgttatgttatcgtgagatacattcttctatgctaataataatgacacgaactgttgttttgagtgcagATGTGGATTGCAAAGGCAGAATATGACGAATCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAAACTGTTTCGATAGATAGGGTTATTGAAGGGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG