1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcaccaaagacaacccatgctatattttatagcctgttctatcacacctatcaaacactaccttggtgtttgctgacaatgttggtggtggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGTGGTAAAAG
species | Glycine max |
transcript | GLYMA02G09230.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG GTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTEST: gi|209711714|gb|BW676853.1|BW676853
genomic: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGgtatatagtt ... tggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGT
EST: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG GTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTEST: gi|192303504|gb|FG998598.1|FG998598
genomic: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGgtatatagtt ... tggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGT
EST: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAG GTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGT
genomic: GGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGgtatatagtt ... tggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGT
acacctatcaaacactaccttggtgtttgctgacaatgttggtggtggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGTGGTAAAAG
tgctgac putative branch site (score: 2)
tatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaccaaagacaacccatgctatattttatagcctgttctatcacacctatcaaacactaccttggtgtttgctgacaatgttggtggtggtgcacagGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGTGGTAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA