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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcattgttgttttgatttttatttactctatttgctgttttaaccttaaaattagttctgttttgcaacatttatttatttcctgtgtttatctagtactctttttcttactccttttttatcaataacatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGTACACTAAGCCCAATAGATTTGTACC

Basic information

species Glycine max
transcript GLYMA02G09080.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 4
gttagcattgttgttttgatttttatttactctatttgctgttttaaccttaaaattagttctgttttgcaacatttatttatttcctgtgtttatctagtactctttttcttactccttttttatcaataacatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGTACACTAAGCCCAATAGATTTGTACC
                         | | | |  | |  |  | ||   || ||      | | || | |   |||||      |   |||| ||| || | |  ||| ||||  |  |             | ||||||||| | || ||||||||||||||||| || ||||| || ||||| |||||||| || ||||||||||||||||| || |||||||| || ||| | || |
-------------------------tctgcacagtgttgtcctctatgtttgaat----ctttattctactctatttaacctagttacgtgtatatttattgcggtttctcttcatgtt-----------ggcttttcagCTTAGCTGTCATGATGCTTCTCTTGCCATAAAGCCTGTATTTGAACGATTTCAATCAGTTGTGATTACATCTGGAACTCTAAGCCCCATTGATCTCTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtgtttatctagtactctttttcttactccttttttatcaataacatttcagCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGTACACTAAGCCCAATAGATTTGTACC
                                         caataac  putative branch site (score: 2)
                                 ttttttatcaataaca  TA-rich tract