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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgggttgacattgtataccaatagtaatgtacaaatagttaatttagcagatgggcgaactttaaatctataaatggactttgaactcgaattttccttcaactaagaggattgaagtgcagGGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTG

Basic information

species Glycine max
transcript GLYMA02G08860.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08860.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G76730.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgttgggttgacattgtataccaatagtaatgtacaaatagttaatttagcagatgggcgaactttaaatctataaatggactttgaactcgaattttccttcaactaagaggattgaagtgcagGGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTG
                           |  || |   |  | | | |||| |   |      |  |||  |    ||    ||  |    | | | |||  |   |||| | |        |||||||  |||| ||||| |||||||| ||| || | |||||||||||||| |||||||| ||||| ||||||||  |||
-------------------------gtgagatttgttacaattcattttaact--ttaaaagatattagttg---aaccaaaccatatgattggagtttgatatgactatgtg--------tgcagGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATGATTCCACACCCGTTGTTACAACTG

upper sequence: GLYMA02G08860.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0072g00300.t01 (Vitis vinifera), 3'ss of exon 3
gtgttgggttgacattgtataccaatagtaatgtacaaatagttaatttagcagatgggcgaactttaaatc-tataaatggactttgaactc--gaattttccttcaactaagaggattgaagtgcagGGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTG
                             | | |    | |  || ||  |  | |       |||  |||  | | | |  ||  ||   |   |||||| |    |  |   | |  |    | |||||  ||||||||||||||||||| ||| || |||||||||||||||| |||||  | || ||  |||| ||||| |
-----------------------------actatcttgacatctacttgtgttgttactgcttcttagaatggtttcactttaccctgtttttaagaatttactggaatttgtcatgtctctgcttcagGGGTTTGCAGAACTTGAATATGGGATGTTGCGGTACATGGGAGCCATAGATGACACTACTCCTATTGTCACCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataaatggactttgaactcgaattttccttcaactaagaggattgaagtgcagGGAATTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACCAGTTGTTACCTCTG
                      aatttt  TA-rich tract