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...ctgcttgtctgcttatattgaagcagaaaatggtttattagtacaaaaaagacagtttatttgttggttgttcaataatcttggttttgtcaaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAATTGGGGGGTTAAATTATTTGAAGGTGAGGGAAAGATAGTTGGTCCAAATG
species | Glycine max |
transcript | GLYMA02G08180.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAG ACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAATEST: gi|298192859|gb|HO033293.1|HO033293
genomic: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAGgtagttgaag ... caaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAAT
EST: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAG ACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAATEST: gi|193628554|gb|FK577194.1|FK577194
genomic: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAGgtagttgaag ... caaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAAT
EST: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAG ACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTAT
genomic: AGTTGAGTGAGAAAGTTGACTTCAATTGGAAAAGGCTCTTGCAAAAGAAGgtagttgaag ... caaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTAT
aaaaagacagtttatttgttggttgttcaataatcttggttttgtcaaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAATTGGGGGGTTAAATTATTTGAAGGTGAGGGAAAGATAGTTGGTCCAAATG
ttttgtc CT-rich tract
tttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcttgtctgcttatattgaagcagaaaatggtttattagtacaaaaaagacagtttatttgttggttgttcaataatcttggttttgtcaaactgcagACAGATGAAATAAACAGATTAAATGGACTTTACAAGCGGATGTTATCCAATTGGGGGGTTAAATTATTTGAAGGTGAGGGAAAGATAGTTGGTCCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg