Sequence
atgc intronic sequence ATGC exonic sequencegtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
Basic information
species | Glycine max |
transcript | GLYMA02G07510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatg-attgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
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---------------------------------------------------------------------------------------------gtactagtgat-tccacccaatgatattttt--tttcatatccactccagtattgcaattaacgtaacttggaaaaatga-ttgtttgtgtaattttattgcagTCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAA
upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
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-------------------------------------------------------------------------------------gtagaatgatctgctcgacat-----tgcctacttgcgtgatttgtcaggtttcatt--atgg-----tttctctttggttttcttacc--gttatgaactctctttgcagTCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAA
upper sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttcccctatttaattgggattttttgttcaataatatatggtgtaaactgtaaattatgatagtatgtagtagttttgcatttttttatttggttggcatatattcggtgaaatatgcgatttcttatgattgatttaatggatgtattttcatttg---ttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
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----------------------------------------------------------------------------------------------gatggttggatgacatt-----gatttttcttttctttctaatttattttttcctttctcttgcctttggcttcctttccccttcttttcttttatgctgtgcagTCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297759|gb|FG989965.1|FG989965EST: TCTTTCTTGGAAATTGCCTTAATTTCATTTCCTTTGGGTACGCTGCTCAG TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTC
genomic: TCTTTCTTGGAAATTGCCTTAATTTCATTTCCTTTGGGTACGCTGCTCAGgtatgtttcc ... tgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatggatgtattttcatttgttctgattacttattcttctgtgtgctgtgcagTCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA
ttctgat putative branch site (score: 3)
atgtattttcattt TA-rich tract