1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatattttctctaaaattgtttttgaattcagcaaaattaattagatgcccttacttacttacatgaagtagttattatttaccactagcaaagttaattaaaattttacgagatggttgttttatattctgagctctcctagagatcttacaaatagttggttttttgggatttctcgaacagATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
species | Glycine max |
transcript | GLYMA02G07390.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGTTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG ATATCCCTAGATCAGCAACTCGCAAGGCTGGAAAGAGCATGCCTACTTTGGEST: gi|298178630|gb|HO024365.1|HO024365
genomic: AATTGTTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGgtatattttc ... tctcgaacagATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
EST: AATTGTTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG ATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
genomic: AATTGTTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAGgtatattttc ... tctcgaacagATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGG
ctgagctctcctagagatcttacaaatagttggttttttgggatttctcgaacagATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
atcttac putative branch site (score: 3)
tttctc putative PPT
ttacaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattttctctaaaattgtttttgaattcagcaaaattaattagatgcccttacttacttacatgaagtagttattatttaccactagcaaagttaattaaaattttacgagatggttgttttatattctgagctctcctagagatcttacaaatagttggttttttgggatttctcgaacagATATCCCTAGATCAGCAACTCGCAAGGCTGGAAGGAGCATGCCTACTTTGGTTTACGTCTACTGTGTGAGCAGAACAACATTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG