1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttctaggctatctgttaaatctgaagagacattcagttttctatatccaccttgaacaaatattctttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
species | Glycine max |
transcript | GLYMA02G07160.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|22523529|gb|BU082340.1|BU082340
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|192312614|gb|FK004302.1|FK004302
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|7284243|gb|AW596839.1|AW596839
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|15204143|gb|BI426911.1|BI426911
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGEST: gi|192312613|gb|FK004301.1|FK004301
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
EST: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCT TTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
genomic: TTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTgtaagtatat ... aatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGG
atccaccttgaacaaatattctttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
tcttaat putative branch site (score: 3)
aaatattctttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctaggctatctgttaaatctgaagagacattcagttttctatatccaccttgaacaaatattctttttgatcttaatactcttgtggaatgttctagTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - ctatctg
- - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - -ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgtg