Sequence
atgc intronic sequence ATGC exonic sequence...tcaagatagaagatatctataatgttttcttttcataaattcttgaattttacttataaaaacagaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
Basic information
species | Glycine max |
transcript | GLYMA02G06720.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------tcaagatagaagatatcta--taatgttttcttttcataaattcttgaattttacttataaaaac----agaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
|| | | |||| | | | | | ||| | ||| ||| | | | | | | | || || || ||||| || | |||| || || ||| || || | |||||||| || |||||||| ||| ||||||||||||| || ||||||||| ||||| || |||||| |||| || |
gtaaatggttcaaaaatacattaatgtccatttcttagattttcagacactatcatctctagatagtgatatgatgcatgatcacattagctccaatgagtcaattttgtttctttgtttattttcttggagGATATGTGTCGGTTGCCAAGCTGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGAT
upper sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 5
tcaagatagaagatatctataatgttttcttttcataaatt-cttgaattttacttataaaaacagaggttaaacctggttc-ttgcaaaatgt-gcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
|||| | | | ||||||| | | | | | || | | | | ||| || ||||| || || ||| | |||| || |||||| |||| || || |||||||| |||||||||| ||||||||||||||| | | ||||||||||||||| ||| |||||| ||||||
---tgataaatagggcttctcatgttttatgtcattctcctgcatgtgtgtcatggacttcgtatgagacctcacatggttaattacacaatatcacttgtagGATCTGTGCTGGGTGCAACTGCGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15288302|gb|BI472193.1|BI472193EST: CTTTATTTCAACCTTTTGCACACTTATTTCCACCTGTATACAG AATCTGTGCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTG
genomic: CTTTATTTCAACCTTTTGCACACTTATTTCCACCTGTATACAGgtacctgtgg ... gtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttacttataaaaacagaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
tacttataaaaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaagatagaagatatctataatgttttcttttcataaattcttgaattttacttataaaaacagaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcaa