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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagatagaagatatctataatgttttcttttcataaattcttgaattttacttataaaaacagaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA

Basic information

species Glycine max
transcript GLYMA02G06720.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------tcaagatagaagatatcta--taatgttttcttttcataaattcttgaattttacttataaaaac----agaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
                          || |  |   |||| |  |   | | |  ||| |  |||      |||    |  | | |  | |    |   || ||   || |||||     || | |||| || || |||   || ||  | |||||||| || |||||||| ||| ||||||||||||| ||   ||||||||| ||||| || |||||| |||| ||  | 
gtaaatggttcaaaaatacattaatgtccatttcttagattttcagacactatcatctctagatagtgatatgatgcatgatcacattagctccaatgagtcaattttgtttctttgtttattttcttggagGATATGTGTCGGTTGCCAAGCTGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGAT

upper sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 5
tcaagatagaagatatctataatgttttcttttcataaatt-cttgaattttacttataaaaacagaggttaaacctggttc-ttgcaaaatgt-gcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
    |||| |       | | ||||||| | |   |    | | ||  | | |   |        |||     || |||||  || || ||| |  |||| || |||||| |||| || ||    |||||||| |||||||||| ||||||||||||||| | |  ||||||||||||||| ||| |||||| ||||||    
---tgataaatagggcttctcatgttttatgtcattctcctgcatgtgtgtcatggacttcgtatgagacctcacatggttaattacacaatatcacttgtagGATCTGTGCTGGGTGCAACTGCGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153345|gb|BM143278.1|BM143278
EST:     CTTATTTCCACCTGTATACAG                         AATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTG
genomic: CTTATTTCCACCTGTATACAGgtacctgtgg ... gtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttacttataaaaacagaggttaaacctggttcttgcaaaatgtgcttgcagAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAA
     tacttataaaaaca  TA-rich tract