Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcaatttttggactgtgtagtcctttgaatttagcctttgctacttggttccaacctagtggttatgattcacatgtttttcttttgtatgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCATACTTGAACACCTACGATGGTCGCACTATCCGCTACCCAGACCCTCTCA

Basic information

species Glycine max
transcript GLYMA02G05370.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05370.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 5
catcaatttttggactgtgtagtcctttgaatttagcctttg--ctacttggttccaac-ctagtggttatgat-tcacatgtttttcttttgtatgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCATACTTGAACACCTACGATGGTCGCACTATCCGCTACCCAGACCCTCTCA
  | || | ||     | | ||   |   | | |    |     |||||   ||   ||  |  || | ||||| | || |||  || |||||| ||    ||||| ||||||||||| ||       || ||||||||||| ||||| || |||||  |||||||||| |||||  | ||||||||||||||||| |||||||
agtgaaatcttctcgggggaagctttgaaagtcttttttacaaactactgcatttagacatttatgttaatgatatgacttgtggtttttttgtctg----cagTTTAAGCTTTGCAAGGTCAAGGGTGTCCAGTTTGGGCAGAAAGGCATACCATATCTGAACACCTATGATGGGAGGACTATCCGCTACCCAGATCCTCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773251|gb|BG238178.1|BG238178
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|192331395|gb|FK019896.1|FK019896
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|208332715|gb|GE130296.1|GE130296
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|17401958|gb|BM178740.1|BM178740
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298185233|gb|HO030446.1|HO030446
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|192330329|gb|FK019879.1|FK019879
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCTGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|4297222|gb|AI442587.1|AI442587
EST:     GTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: GTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298186516|gb|HO037149.1|HO037149
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|6070919|gb|AW100306.1|AW100306
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGC
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGC
EST: gi|13480012|gb|BG509355.1|BG509355
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|207746121|gb|GD717847.1|GD717847
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|16996691|gb|BM086063.1|BM086063
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|254314706|gb|GR829699.1|GR829699
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|24205192|gb|BU964445.1|BU964445
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|14011931|gb|BG726853.1|BG726853
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|9564990|gb|BE474499.1|BE474499
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298171206|gb|HO016238.1|HO016238
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298169563|gb|HO020923.1|HO020923
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|209713029|gb|BW684323.1|BW684323
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|192306160|gb|FG995024.1|FG995024
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|208323165|gb|GE120518.1|GE120518
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|42723142|gb|CK769041.1|CK769041
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|7686422|gb|AW757070.1|AW757070
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATACCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298185840|gb|HO031001.1|HO031001
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|24136699|gb|BU927209.1|BU927209
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|209711384|gb|BW665355.1|BW665355
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|208304228|gb|GE104323.1|GE104323
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298166568|gb|HO010007.1|HO010007
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|18730191|gb|BM525737.1|BM525737
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|208204693|gb|GE007876.1|GE007876
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|37995318|gb|CF806907.1|CF806907
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298172842|gb|HO019826.1|HO019826
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAATGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298178096|gb|HO027479.1|HO027479
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298185836|gb|HO030997.1|HO030997
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|9901739|gb|BE610707.1|BE610707
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|208057359|gb|GD850908.1|GD850908
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTNTCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|193596150|gb|FK549597.1|FK549597
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|193412177|gb|FK376470.1|FK376470
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|18039968|gb|BM308262.1|BM308262
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|13479334|gb|BG508677.1|BG508677
EST:     ACACCAAAGGTCGATTCCGTCTACACTAAGTCATAGATGACGAGGCTAAG                         GTCAAGCTTTCGCAA-GCTCGCTCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTT-GCAAAGTTCGCTCA
EST: gi|298165950|gb|HO008921.1|HO008921
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298186477|gb|HO037110.1|HO037110
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAGGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|26058865|gb|CA801779.1|CA801779
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|24205206|gb|BU964459.1|BU964459
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|24135604|gb|BU926114.1|BU926114
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|7232947|gb|AW568298.1|AW568298
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|18039341|gb|BM307635.1|BM307635
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|11413001|gb|BF425021.1|BF425021
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|23727082|gb|BU761559.1|BU761559
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|4397559|gb|AI496556.1|AI496556
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|16347113|gb|BI972708.1|BI972708
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|27425899|gb|CA937419.1|CA937419
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|33390170|gb|CA853377.1|CA853377
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGAATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|213596261|gb|DB960218.1|DB960218
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCACGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|193601367|gb|FK552632.1|FK552632
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|18040328|gb|BM308622.1|BM308622
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|22541610|gb|BU091453.1|BU091453
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298173423|gb|HO016759.1|HO016759
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCACAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298169333|gb|HO020693.1|HO020693
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|15662189|gb|BI699560.1|BI699560
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|298184731|gb|HO029944.1|HO029944
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|16280112|gb|BI943789.1|BI943789
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|6567212|gb|AW234823.1|AW234823
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCAGAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
EST: gi|213602877|gb|DB972451.1|DB972451
EST:     ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAG                         TTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA
genomic: ACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGgtacttttgt ... atgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggttccaacctagtggttatgattcacatgtttttcttttgtatgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCATACTTGAACACCTACGATGGTCGCACTATCCGCTACCCAGACCCTCTCA
                                 tttttcttttgtat  CT-rich tract
                                 tttttcttttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catcaatttttggactgtgtagtcctttgaatttagcctttgctacttggttccaacctagtggttatgattcacatgtttttcttttgtatgatggcagTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCATACTTGAACACCTACGATGGTCGCACTATCCGCTACCCAGACCCTCTCA

- - - - - - gactgtg
- - - - - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - cctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttatg