Sequence
atgc intronic sequence ATGC exonic sequence...attttgttaaaaaatttctcaacctctacatattttatcaccaattgttctttcagttaagagttaatcctttaccgtttttttatttgaaatgagacagACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAA
Basic information
species | Glycine max |
transcript | GLYMA02G05160.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05160.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G803949_T02 (Zea mays), 3'ss of exon 4
attttgttaaaaaatttctcaacctctacatattttatcaccaattgttctttcagttaagagttaatcctt-taccgtttttttatttgaaatga-gacagACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAA
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aactagtggcataacttgtacacaaacccacgcctag--agtaaagcctcaggttgctagcagcacatccttatatcttcacaatgcacattttactgacagATCTTCGAGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTCCTATCACTACTGCTCAG
upper sequence: GLYMA02G05160.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 3'ss of exon 4
attttgttaaaaaatttctcaacctctacatatttta-tcaccaattgttctttcagttaa-gagttaatcctttaccgtttttttatttgaaatga-gacagACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAA
| | | | | || | | | |||| || | | | | | | | ||| ||| | | || ||||| || | | | | || | |||| ||||||||||| || ||||| ||| | || ||||||||||| || || ||||||||||||||
actgtat-agcaagtgtat--acctttataaaagacacttgcaagatcttcagtcaactcatgatcctggcctttttgattgtctaaccttggttgttgtcagATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttctttcagttaagagttaatcctttaccgtttttttatttgaaatgagacagACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAA
agttaat putative branch site (score: 4)
tttttttatttgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attttgttaaaaaatttctcaacctctacatattttatcaccaattgttctttcagttaagagttaatcctttaccgtttttttatttgaaatgagacagACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - aaaaaat
- - - - - - - - -ctcaacc
- - - - - - - - - - - - - - - - - - -tcaccaa