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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcactaagaactcctccaacaaaaatgtttcttaaccaatcactttaaaccagAAGAAGTAAAGGCTGCAATTGTTACTTGTGGGGGCTCTGCCCTGGTCTTAATGAT

Basic information

species Glycine max
transcript GLYMA02G04570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------------------------------------gtagcactaagaa-ctcctccaacaaaaatgtttcttaacc---------aat-cactttaaaccagAAGAAGTAAAGGCTGCAATTGTTACTTGTGG-GGGCTCTGCCCTGGTCTTAATGAT
                                                                              |   |  | ||| |   ||||      |   | ||   ||         |||  |||| ||||| |||  |||||| || |||||||| ||||| || ||||||||||||||||||||||||
tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtgtttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT

upper sequence: GLYMA02G04570.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0199g00240.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------------------------------------------------------gtagcactaagaa-ctcctccaacaaaaatgtttcttaacc---------aat-cactttaaaccagAAGAAGTAAAGGCTGCAATTGTTACTTGTGG-GGGCTCTGCCCTGGTCTTAATGAT
                                                                              |   |  | ||| |   ||||      |   | ||   ||         |||  |||| ||||| |||  |||||| || |||||||| ||||| || ||||||||||||||||||||||||
tctagtcattgttttacttttaatgtttgcatttgatatgatattatattttatctaaaggtttatttggtatttgattgatatgatgaaacctttccagGGTTCACCGTGCTGGGCCTCGGGAAAAAATATACTTCAAACCTGAAACAGTAAATGCAGCAATTGTAACTTGCGGAGGGCTCTGCCCTGGTCTTAATGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcactaagaactcctccaacaaaaatgtttcttaaccaatcactttaaaccagAAGAAGTAAAGGCTGCAATTGTTACTTGTGGGGGCTCTGCCCTGGTCTTAATGAT
                               tcttaac  putative branch site (score: 2)
                                         tcacttt  putative PPT
                      aaaaatgtttcttaa  TA-rich tract