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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgctaatatgagatgatttgaagactatacgaaggttcattgaatcattgatgtctttttctctctaatgcgtgaggagctgaaccttacagGTGTGTTGGATATCATAGTGAAGCGGATGCTCCTAGCCGCCGGCTTGCTAAACCGCTAATCTTTTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGC

Basic information

species Glycine max
transcript GLYMA02G04360.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04360.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 3'ss of exon 4
gttagttgctaatatgagatgatttgaagactatac---------gaaggttcattgaatc--attgatgtctttttctctctaatgcgtgaggagctgaaccttacagGTGTGTTGGATATCATAGTGAAGCGGATGCTCCTAGCCGCCGGCTTGCTAAACCGCTAATCTTTTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGC
||||||| |   | | ||||  ||| |     |||           || | ||| |  ||       |   ||||| | |  |  ||  || |   ||     ||||||||||||||||||||| ||||| || ||||||||||| ||  | ||||| ||||| || ||||||||| |||| |||||||| || |||||||||||||| 
gttagttaccc-tgtcagattctttcacatgcatatcctgggagaaaaagctcaatatatgtggcaaactccttttacacattggtgtatgtgcttct----tttacagGTGTGTTGGATATCACAGTGATGCTGATGCTCCTAGTCGTAGACTTGCGAAACCACTTATCTTTTGTCGAACCGAGAGTGATTGTCCAATGGAAAATGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgaatcattgatgtctttttctctctaatgcgtgaggagctgaaccttacagGTGTGTTGGATATCATAGTGAAGCGGATGCTCCTAGCCGCCGGCTTGCTAAACCGCTAATCTTTTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGC
                         ctctaat  putative branch site (score: 3)
     aatcatt  TA-rich tract