1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggcgttttaccaattcttttacttataaccgacacaggagttaagacttttctttgatatgagaatcttgactaatgaactgcaactaatggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
species | Glycine max |
transcript | GLYMA02G04320.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|11412198|gb|BF424209.1|BF424209
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGGAAG-AAGTTGCTEST: gi|120530295|gb|EH258429.1|EH258429
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGG-AAGGAAGTTGCT
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|11412830|gb|BF424841.1|BF424841
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|37996526|gb|CF808115.1|CF808115
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: CAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|193524670|gb|FK480077.1|FK480077
genomic: CAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|13562529|gb|BG550749.1|BG550749
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|192313436|gb|FK005516.1|FK005516
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
acttttctttgatatgagaatcttgactaatgaactgcaactaatggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
aactaat putative branch site (score: 2)
tttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcgttttaccaattcttttacttataaccgacacaggagttaagacttttctttgatatgagaatcttgactaatgaactgcaactaatggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA