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gtttaacataattgtcatatttcttcttttactggatcttgtaatttttattatgttaatagctaaacatactccttatctaattaaatagcattaagctattttatttgttgattatgctaacatacaacatttttttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCAT
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|120531769|gb|EH259902.1|EH259902
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|213590180|gb|DB963799.1|DB963799
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|193524670|gb|FK480077.1|FK480077
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: AAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|213594062|gb|DB961950.1|DB961950
genomic: AAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|120495797|gb|EH223964.1|EH223964
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|192313436|gb|FK005516.1|FK005516
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGAEST: gi|105633833|gb|DW247196.1|DW247196
genomic: TGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
EST: TTGGCAACCCACATGCATTGGGACAGAAACCACTGAGCTTCCCTCGTCAG GTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
genomic: TTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAGgtttaacata ... ttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGA
attaagctattttatttgttgattatgctaacatacaacatttttttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCAT
tgctaac putative branch site (score: 1)
cattttttt putative PPT
tattttatttgttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaacataattgtcatatttcttcttttactggatcttgtaatttttattatgttaatagctaaacatactccttatctaattaaatagcattaagctattttatttgttgattatgctaacatacaacatttttttggttgcagGTTGTTGCTTTGTGCCAAGCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT