Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaatacatatttttcacctttcagattaaataatttatatattttgcacatgtgaaatttccccttatatatgttacaatgtggtttgttcatatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG

Basic information

species Glycine max
transcript GLYMA02G04120.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701247|gb|BW652225.1|BW652225
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|192305509|gb|FG994303.1|FG994303
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|5753577|gb|AI960864.1|AI960864
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|213601137|gb|DB956473.1|DB956473
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|213598625|gb|DB964247.1|DB964247
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|192306307|gb|FG995101.1|FG995101
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|7589883|gb|AW705648.1|AW705648
EST:     TAAGCTNTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGGT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|298178311|gb|HO024046.1|HO024046
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTT
EST: gi|151410816|gb|EV280631.1|EV280631
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|298174335|gb|HO017671.1|HO017671
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTC
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTC
EST: gi|6566595|gb|AW234236.1|AW234236
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|209697931|gb|BW670133.1|BW670133
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|213600535|gb|DB960083.1|DB960083
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|16346050|gb|BI971645.1|BI971645
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACTTCAGAAATCGTT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTT
EST: gi|213593143|gb|DB969885.1|DB969885
EST:     TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAG                         GTTAAGACTGCATTTGTTCCAACT
genomic: TAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGgtactaaaat ... catatttcagGTTAAGACTGCATTTGTTCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacatgtgaaatttccccttatatatgttacaatgtggtttgttcatatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG
                                       tttgttc  CT-rich tract
                   ttatatatgttacaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactaaaatacatatttttcacctttcagattaaataatttatatattttgcacatgtgaaatttccccttatatatgttacaatgtggtttgttcatatttcagGTTAAGACTGCATTTGTTCCAACTGGAATGTCTCTTACGTCAGAAATCGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG