1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcattataacattacataactgaccatttcccactactcctgaggaagaagggatgccggcagatacaaggatactaacattttcttttattttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCAATGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACTAAA
species | Glycine max |
transcript | GLYMA02G04110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGA GTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCEST: gi|193336759|gb|FK304525.1|FK304525
genomic: TTTGTAGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGAgtaattcctt ... attttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCC
EST: TTGTTGGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGA GTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCEST: gi|193305460|gb|FK269921.1|FK269921
genomic: TTG-TAGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGAgtaattcctt ... attttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCC
EST: TTTGTGGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGA GTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCC
genomic: TTTGTAGTAGATGCTTTGGACTTTTTACCAAACTGCCGTGCTGCTTCAGAgtaattcctt ... attttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCC
gaagaagggatgccggcagatacaaggatactaacattttcttttattttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCAATGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACTAAA
tactaac putative branch site (score: 0)
ttttcttttattttat CT-rich tract
atactaacattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattataacattacataactgaccatttcccactactcctgaggaagaagggatgccggcagatacaaggatactaacattttcttttattttattagGTACCTTTATGATCTATTGACTAAAGGAAGTGTTGTGAGGAAGAAGATTCCAATGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACTAAA
- - - - - - - - - - ctgacca
- - - - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - -ctcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - ggatgcc