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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaggctggtattcaatgcatgttctatttttactttttttagctagtaagggaattacagtttctctgatattgggtgatatgctttgtattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG

Basic information

species Glycine max
transcript GLYMA02G03990.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315191|gb|FK010015.1|FK010015
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|298175511|gb|HO018222.1|HO018222
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|298195403|gb|HO039234.1|HO039234
EST:     GAGGAGAGGATCAGGACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|20449478|gb|BQ253602.1|BQ253602
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|23064138|gb|BU578911.1|BU578911
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|13480785|gb|BG510128.1|BG510128
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|192312289|gb|FK005293.1|FK005293
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|20813541|gb|BQ298019.1|BQ298019
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
EST: gi|20813542|gb|BQ298020.1|BQ298020
EST:     GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGA                         GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
genomic: GAGGAGAGGATCAGAACCGGCTTCATCCAATTTAAGAATGAGAAATTTGAgtacgtatcg ... tattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtaagggaattacagtttctctgatattgggtgatatgctttgtattttccagGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG
                    ctctgat  putative branch site (score: 4)
                                             tattttcc  putative PPT
                                         tttgtatttt  TA-rich tract