1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatttcatgtttaattaattatgtatgcttcccaaagaaaatctgcctgtatatatatatatatatatatatatccttattatatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
species | Glycine max |
transcript | GLYMA02G03740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGEST: gi|151393888|gb|EV263759.1|EV263759
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|10232292|gb|BE801180.1|BE801180
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGATCCTGTCTGGTATAAAGEST: gi|192306018|gb|FG993636.1|FG993636
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|9564215|gb|BE473724.1|BE473724
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGACCATAGEST: gi|209709438|gb|BW668366.1|BW668366
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGACCATAG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGEST: gi|151396617|gb|EV266494.1|EV266494
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
EST: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCG CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
genomic: ATGATCAAGAAATCAACTTCTTGACAGCATGGCACAATTCAGCAGATTCGgtgagaaaga ... tcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
gcctgtatatatatatatatatatatatatccttattatatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
tgctctttt CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttcatgtttaattaattatgtatgcttcccaaagaaaatctgcctgtatatatatatatatatatatatatccttattatatatgctcttttacagCACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG
- - -tcatgtt
- - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - cttccca
- - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - tctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatgc