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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttgctgattcatatttttaatagaatgcctcccaaatggcactaagaaatgcttattgtgttatgcagGGTGCAAAAGCAATTGCTGAAATGTTGAAGAAAAATTCAAGTTTGCGGGTTCTTGAACTTAACAATAACATGATTGAATATTCT

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------gttagcttgctgattcatatttttaatagaatgcctcccaaatggca-------ctaagaaatgcttattgtgttatgcagGGTGCAAAAGCAATTGCTGAAATGTTGAAGAAAAATTCAAGTTTGCGGGTTCTTGAACTTAACAATAACATGATTGAATATTCT
                                         | |  |||   | |||  ||||  ||   || |||||   | |||          |||    ||   | | |  |||| |||| ||||| || ||||| || |||||||||||||||||||| |||||  |  |||| |||||||| || |||||||| ||||||
gttagtactttttgcctcaaaactggtattctactaaatatgctgtctttaggtttccaatttagaaccaaaggcctctttagtggtgatgtgccttaaattctgtccacttttctatgtagGGGGCAAAGGCTATTGCAGAGATGTTGAAGAAAAATTCAAGCTTGCGTATCGTTGAGCTTAACAACAATATGATTGATTATTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaatagaatgcctcccaaatggcactaagaaatgcttattgtgttatgcagGGTGCAAAAGCAATTGCTGAAATGTTGAAGAAAAATTCAAGTTTGCGGGTTCTTGAACTTAACAATAACATGATTGAATATTCT
 ttttaat  putative branch site (score: 3)
     aatagaat  TA-rich tract