1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtcacactagtccccagcatacaatttcttattagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAG
species | Glycine max |
transcript | GLYMA02G03080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|254322999|gb|GR839912.1|GR839912
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|15664218|gb|BI701589.1|BI701589
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|58016185|gb|CX702927.1|CX702927
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|15199292|gb|BI423757.1|BI423757
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|58019317|gb|CX706059.1|CX706059
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|151406023|gb|EV275838.1|EV275838
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACGCGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|19054086|gb|BM732753.1|BM732753
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|27427278|gb|CA938798.1|CA938798
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTEST: gi|58016174|gb|CX702916.1|CX702916
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
ttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAG
tttttgagaaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcacactagtccccagcatacaatttcttattagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT