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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatacacttcttctcgccataggttttttaattttgtcttgtaatttggcaacttagagtcttagactaatgggaatggaccattttgttatgcctttctcttattgcttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG

Basic information

species Glycine max
transcript GLYMA02G02600.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193549059|gb|FK505410.1|FK505410
EST:     CTGTAGATTTTTAGGTTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAAGAACAACCA
genomic: CTGTAGATTTTTAGGT-GGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACA-GAACAACCA
EST: gi|31459894|gb|CD401922.1|CD401922
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|15287962|gb|BI471853.1|BI471853
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|10236299|gb|BE805187.1|BE805187
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|254346945|gb|GR856667.1|GR856667
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|17022553|gb|BM093587.1|BM093587
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|27427037|gb|CA938557.1|CA938557
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|15203212|gb|BI425980.1|BI425980
EST:     ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
EST: gi|6913295|gb|AW394825.1|AW394825
EST:     CCGATACCTCGACTTTACATCTG                         ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT
genomic: CCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactaatgggaatggaccattttgttatgcctttctcttattgcttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAG
                                          tgcttac  putative branch site (score: 2)
                              cctttctcttattgct  CT-rich tract
                   attttgttat  TA-rich tract