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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcttgtaatgatatgttcccaaatttattgttgaattggttcactgtcaatggtgtacaattcctgatgaattgttttcctactgtgttacctggtatacaatttttaatctatatttgtttacttctttccagGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAG

Basic information

species Glycine max
transcript GLYMA02G01930.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctcttgtaatgatatgttcccaaatttattgttgaattggttcactgtcaatggtgtacaattcctgatgaattgttttcctactgtgttacctggtatacaatttttaatctatatttgtttacttctttccagGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAG
|||||||| ||| |     ||   |   | |||   | | | |   |  ||| | |||||  |        | ||   |||   |  |  | | |||| |||| |  |  ||  | ||||| ||||||    | | ||||||| |||||||||||||||||||| |||||||| |||||| | || || ||  | ||    ||| |   | | ||| | || |||
gtaagccttttgaacaagaatagccatgatttttaagataact--atctact-taaatggcttgacccatttcattg-ttgaaatgatgattttttac-tggttttta--ttgaattctatgtttgttg---tttgtccagGTTATGCACATTGCAGCCGCAACAGAAATAAATTCAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactgtgttacctggtatacaatttttaatctatatttgtttacttctttccagGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAG
                        ttttaat  putative branch site (score: 3)
                                    tttgtttacttctttc  putative PPT
                tatacaatttttaatc  TA-rich tract