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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttctggttttcaaaaagttttgaagtggataaagaaatttctttcatataaatctctgaatgacttcttcgtgaattattttactgcagAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAGAAGTTTTCACCAAGCCATCATCTCCTGCCATCAGGCAGTGGTCTATATC

Basic information

species Glycine max
transcript GLYMA02G01720.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01720.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g01240.t01 (Vitis vinifera), 3'ss of exon 5
gtaaagttctggtt-ttcaaaaagttttgaagtggataaagaaatttctttcatataaatctctgaatgacttcttcgtgaattattttactgcagAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAGAAGTTTTCACCAAGCCATCATCTCCTGCCATCAGGCAGTGGTCTATATC
|||   |     ||  || ||    ||  |  |||     |||| |      |  ||||       |      |   ||| ||| || |||| |||||| |  | ||| | || |||||| |  | ||||| || |||||||| ||||||   || ||    |||||||||||||| |||||||||||||||||||
gtactatctccattactctaaggacttgtatatggggtccgaaaatatgaaaaattaaact----gacattgccaatgtggatttttgtactacagAAGGTTTTGTATTCTCCCATGGGTGAGTTTCTGATCCTCCAGCCTGAAGAGAAGCACTCTCCGCATCATCATCTCCTGCCTTCAGGCAGTGGTCTATATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16997140|gb|BM086512.1|BM086512
EST:     TGAAAGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAG                         AAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAG
genomic: TGAAAGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGgtaaagttct ... tttactgcagAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAG
EST: gi|120533880|gb|EH262013.1|EH262013
EST:     TGAAAGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAG                         AAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAG
genomic: TGAAAGCTGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGgtaaagttct ... tttactgcagAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttctttcatataaatctctgaatgacttcttcgtgaattattttactgcagAAGCTACTATATGCACCAATGGGTAATCTGCTGATTCTGCAGCCTGATGAGAAGTTTTCACCAAGCCATCATCTCCTGCCATCAGGCAGTGGTCTATATC
                                         ttatttt  CT-rich tract
     tctttcatataaat  TA-rich tract