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gttagccccttgtatattatttagtgtgcatcttttaattgtatggtagtgatgctttgcagtatattgatgtttactttgtcttttgcctttattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGATC
species | Glycine max |
transcript | GLYMA02G01220.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|120532325|gb|EH260458.1|EH260458
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|207819740|gb|GD790444.1|GD790444
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|193551204|gb|FK507989.1|FK507989
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAG-TTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|193379170|gb|FK343944.1|FK343944
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: CTGAGCGAGTTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|207809238|gb|GD782208.1|GD782208
genomic: CTGAGCGAG-TTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: GGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|4396096|gb|AI495093.1|AI495093
genomic: GGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
agtgatgctttgcagtatattgatgtttactttgtcttttgcctttattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGATC
tattgat putative branch site (score: 3)
tttactttgtcttttg CT-rich tract
tatattgatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccccttgtatattatttagtgtgcatcttttaattgtatggtagtgatgctttgcagtatattgatgtttactttgtcttttgcctttattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC