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gtaagttacttatagatattcaaagtccttacccataacatatccaatattgtccttccataatatctaacttttctaagatgtatcactgctttttcaaatgtctcaggatagtccttcttttggtttaggatttctatacttatttttcctctctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAG
species | Glycine max |
transcript | GLYMA02G00750.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCTCTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATEST: gi|6566941|gb|AW234572.1|AW234572
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCAT
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCTCTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATEST: gi|254328397|gb|GR835362.1|GR835362
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCAT
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATEST: gi|192301309|gb|FG989014.1|FG989014
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCAT
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCAT
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCAT
atagtccttcttttggtttaggatttctatacttatttttcctctctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAG
ctctgat putative branch site (score: 4)
tttctatacttatttt CT-rich tract
atttctatacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacttatagatattcaaagtccttacccataacatatccaatattgtccttccataatatctaacttttctaagatgtatcactgctttttcaaatgtctcaggatagtccttcttttggtttaggatttctatacttatttttcctctctgattccagGAGTTCCCTCCACTAGATCAATTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACTATACCATTGCTTATTTAAAGATGGCTCTGTAAAAAATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG