1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtactctatgctcttgtgataggtagtgatctggatttccaattctaaacagaatctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTG
species | Glycine max |
transcript | GLYMA01G45380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAG GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGEST: gi|193548893|gb|FK508364.1|FK508364
genomic: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG
EST: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAG GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGEST: gi|151394579|gb|EV264450.1|EV264450
genomic: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGG
EST: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAG GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGEST: gi|193513745|gb|FK468675.1|FK468675
genomic: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGG
EST: GATGTTACCATATTGCCTACTCTTGTAGGTCAATAATCGACAATATCGAG GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGEST: gi|193610199|gb|FK565763.1|FK565763
genomic: GATGTTACCATATTGCCTACTCTTGT-GGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGG
EST: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAG GAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGG
genomic: TGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGgtttgtactc ... atctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGG
tgctcttgtgataggtagtgatctggatttccaattctaaacagaatctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTG
ttctaaa putative branch site (score: 2)
tctttcc putative PPT
aattctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtactctatgctcttgtgataggtagtgatctggatttccaattctaaacagaatctttccagGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG