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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctaattaaagatgttcttagcttacaatttcttaatcaatgagacacttgagctgacaatgacattgatgggtactggttttcagAATCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAG

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 4
---gtgagtgctaattaaa-gatgttcttagc-ttacaatttcttaatcaatgagacacttgagctgacaatgacattgatgggtactggttttcagAATCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAG
   | |  | ||  || |  |||  | ||    ||   || | ||  | || ||  || | || |  | |||    |     |     | || ||||||||||||||||| |||||||| ||||||||| || |||||| ||||||| |||||||| ||||| ||| | ||||| |||||||| |||||||||||||
gtagggttttctcttttactgatagttttgatattgtcatctattttttaaagattcattagaac--aaaattttctaatccgaggacgcttatcagAATCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatcaatgagacacttgagctgacaatgacattgatgggtactggttttcagAATCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAG
                                                ttttc  CT-rich tract