1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagaattaattttcatgcttttatctcggtgaaagaaaagttatgttaagctggttgtttttttattaaaaaaaatttccttctttcaccatcattaatcagtccagtagaggcctggaaagaaaggtctacatgcataaggtagcaaggttgatatatttgttgacgtgtgcacttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG
species | Glycine max |
transcript | GLYMA01G43910.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTG ATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGEST: gi|151396333|gb|EV266210.1|EV266210
genomic: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTGgtgagaatta ... acttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAG
EST: AGAAGCTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTG ATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGEST: gi|254345773|gb|GR859420.1|GR859420
genomic: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTGgtgagaatta ... acttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTG ATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGEST: gi|151393667|gb|EV263542.1|EV263542
genomic: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTGgtgagaatta ... acttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAG
EST: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTG ATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAG
genomic: AGAAACTAAGGCCACTTTGGAGGCACTACTTTGACAACACAGATGGCCTGgtgagaatta ... acttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAG
ctacatgcataaggtagcaaggttgatatatttgttgacgtgtgcacttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG
tgttgac putative branch site (score: 3)
ttgatatatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaattaattttcatgcttttatctcggtgaaagaaaagttatgttaagctggttgtttttttattaaaaaaaatttccttctttcaccatcattaatcagtccagtagaggcctggaaagaaaggtctacatgcataaggtagcaaggttgatatatttgttgacgtgtgcacttatgcagATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTAAAGCAAAGCAGGAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG