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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactaggagtgtttgttggaaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGTAAAATAATTTTGTTAAGATACTTCAACCCAGTTGGTGCACACCCCAGTG

Basic information

species Glycine max
transcript GLYMA01G43540.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713128|gb|BW653837.1|BW653837
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|15000492|gb|BI321306.1|BI321306
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|12489618|gb|BG043139.1|BG043139
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|151398432|gb|EV268303.1|EV268303
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGA-CTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|209699775|gb|BW652120.1|BW652120
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGTAAAATAATTTTGTTAAGATACTTCAACCCAGTTGGTGCACACCCCAGTG
                              atctgat  putative branch site (score: 4)
                                           tttgtttttc  putative PPT
        atttgaatt  TA-rich tract