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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttagttgtgttgtcgttgattatatgtaattttttgtgactggtgcatggccttgtttagttttgtgttgtggttgatcatatgttttttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAATAAGCGTCGCCGTGTACAGTGAGTTTTTGATG

Basic information

species Glycine max
transcript GLYMA01G43520.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307658|gb|FG999697.1|FG999697
EST:     AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: gi|208325146|gb|GE124022.1|GE124022
EST:     TGAAGGATGGGCTTCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: TGAAGGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: gi|192320651|gb|FK012733.1|FK012733
EST:     AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: gi|209697093|gb|BW667085.1|BW667085
EST:     AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: gi|207825073|gb|GD797233.1|GD797233
EST:     TCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: TCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
EST: gi|208138492|gb|GD935152.1|GD935152
EST:     AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTG                         GAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT
genomic: AGATCTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTGCTTTCCTGgtatgttccc ... tttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcatggccttgtttagttttgtgttgtggttgatcatatgttttttgtgacagGAGTCTGCAGACTCGTCAAAGCCAATTACTGCTGCTGATGTCCACCAGTTTTTTGATGACATTAAGAATAAGCGTCGCCGTGTACAGTGAGTTTTTGATG
                             ggttgat  putative branch site (score: 5)
 tgtttttt  putative PPT
 atcatatgtttttt  TA-rich tract