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gtgataaaaggattgctgctgtcttgtgataattggtaacatttcatactaggctaataagcttttgaatttaaacttgctactccatttctcaccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCCAG
species | Glycine max |
transcript | GLYMA01G41570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGGCTGAGATTGTTTGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCEST: gi|24136207|gb|BU926717.1|BU926717
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
EST: GCAGGCTGAGATTGTTTGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCEST: gi|207751210|gb|GD726213.1|GD726213
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
EST: GCAGGCTGAGATTGTTTGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCEST: gi|213613400|gb|DB956914.1|DB956914
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
EST: GCAGGCTGAGATTGTTTGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCEST: gi|21285430|gb|BQ473301.1|BQ473301
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
EST: GCAGGCTGAGATTGTTTGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCEST: gi|6071031|gb|AW100418.1|AW100418
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
EST: GCAGGCTGAGATTGTTCGTGAAAAG GTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
genomic: GCAGGCTGAGATTGTTTGTGAAAAGgtgataaaag ... ccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCC
taggctaataagcttttgaatttaaacttgctactccatttctcaccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCCAG
ttctcac putative branch site (score: 2)
ctccatttctcacc CT-rich tract
taataagcttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgataaaaggattgctgctgtcttgtgataattggtaacatttcatactaggctaataagcttttgaatttaaacttgctactccatttctcaccatgtacagGTGAAGCAAATGAAAGAATTGAAGGAAGGATACAACATTGTTGGACTTTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA