1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaattgttatgcttgagtctaaattaaaaagtaagatcattcaacttgttaaattagtttgatattcattcaagttagatttgaattttatttgaaaagaaactcaagacgggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC
species | Glycine max |
transcript | GLYMA01G40930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATEST: gi|193585531|gb|FK538481.1|FK538481
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATEST: gi|151402601|gb|EV272414.1|EV272414
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATEST: gi|213591806|gb|DB977276.1|DB977276
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATEST: gi|192300500|gb|FG988857.1|FG988857
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
EST: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAG CTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
genomic: CTGTTCTTTGCGGGGTCTGATGATTCTATATTTTCTGAATCTGATAATAGgtaaattgtt ... gatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTAT
gggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC
gattaat putative branch site (score: 3)
attaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgttatgcttgagtctaaattaaaaagtaagatcattcaacttgttaaattagtttgatattcattcaagttagatttgaattttatttgaaaagaaactcaagacgggggggattaatctttcaacattttgttttgtggtcttgtaaatgatggagcagCTGGGTGAATTTTACTAAGTTCTTGACTGGAGCCTCAACTGTGGGAGGTATTGCCATTCCAAGCATATTAAAGCATGCTGGGGTTATCGGTTGGGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG