1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgtgaaaataaaagaaaaacaattgttggctttataatattgttttctgcatggaacactatatctgagtgtagtaatttattgttgcaattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTCAAGGAATGGCATCATTG
species | Glycine max |
transcript | GLYMA01G40650.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAG GGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTEST: gi|192317383|gb|FK007505.1|FK007505
genomic: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAGgtttgtttag ... aattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
EST: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAG GGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTEST: gi|7693502|gb|AW761594.1|AW761594
genomic: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAGgtttgtttag ... aattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
EST: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAC GGGGCATTGGCTGATATATATTTACGAGGCAGTAATCTTATAACAGATGTTEST: gi|151400500|gb|EV270314.1|EV270314
genomic: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAGgtttgtttag ... aattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
EST: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAG GGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTEST: gi|11274513|gb|BF324866.1|BF324866
genomic: TTGCAGCAAGTTCAGTTGGAGAGGAGCTCTTCTACAGGGCTGCTGTTCAGgtttgtttag ... aattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
EST: GCTCTTCTACAGGGCTGCTGTTCAG GGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
genomic: GCTCTTCTACAGGGCTGCTGTTCAGgtttgtttag ... aattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTT
tttctgcatggaacactatatctgagtgtagtaatttattgttgcaattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTCAAGGAATGGCATCATTG
ttctcc CT-rich tract
tagtaatttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgaaaataaaagaaaaacaattgttggctttataatattgttttctgcatggaacactatatctgagtgtagtaatttattgttgcaattctccagGGGGCATTGGCTGATATATTTTTACGAGGCAGTAATCTTATAACAGATGTTCAAGGAATGGCATCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - aaaataa
- - - - - - -aagaaaa
- - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc