Sequence
atgc intronic sequence ATGC exonic sequencegtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatgaccttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG
Basic information
species | Glycine max |
transcript | GLYMA01G40380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G40380.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatgaccttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG--------------------------
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gtaa--atcatcttttctaaactttatgt-ctctttgaccttgt--------tgtatgatttatttatata----atatgataatggatatttga-agGCGGAGAATTATCAGAAAGAGATTGAAGACATGAAGAACATGACTAGACAAGAATATGTTGCACATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTG
upper sequence: GLYMA01G40380.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
gtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatg-accttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG
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---------------gtaataatttgaacccc--attggagtgcagtgatctgttggttctttgcaattgaa---atgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcagcttccaggatttaataacgtaactaatgcaagtatgaccttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG
cctttt CT-rich tract
atttaataacgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatgaccttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC