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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgaagccttttctccctctacatttacaccttaagctagcaatcactagttgaatgtatgaaacttggcaagttctcataatcaaatctcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGAGCTTCATGATTTGCTGAGCAAACCTTCATTGAGTGGCATCCCTTTGCTG

Basic information

species Glycine max
transcript GLYMA01G40210.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719919|gb|BW666002.1|BW666002
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATC
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATC
EST: gi|192309196|gb|FG999437.1|FG999437
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|209713657|gb|BW679369.1|BW679369
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|21600628|gb|BQ610959.1|BQ610959
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|193614466|gb|FK563218.1|FK563218
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192326131|gb|FK016958.1|FK016958
EST:     AG-TTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCACATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|298198680|gb|HO042043.1|HO042043
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|151402581|gb|EV272394.1|EV272394
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|298181019|gb|HO022458.1|HO022458
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192299066|gb|FG990394.1|FG990394
EST:     AGGTTCCGCAGCATGTGGGAACGCTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|151411975|gb|EV281786.1|EV281786
EST:     AGGTTCCGCAGCATGCGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|213608988|gb|DB962914.1|DB962914
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATNACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192315185|gb|FK010009.1|FK010009
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|37996453|gb|CF808042.1|CF808042
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192325013|gb|FK015434.1|FK015434
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|209712282|gb|BW668476.1|BW668476
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|15813605|gb|BI785880.1|BI785880
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|213597753|gb|DB960310.1|DB960310
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|209715505|gb|BW682171.1|BW682171
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|58014594|gb|CX701336.1|CX701336
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|58018793|gb|CX705535.1|CX705535
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|213614866|gb|DB978313.1|DB978313
EST:     GGAACGTTACTGTCGTGCCGTTTCTGCTAACCT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: GGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192309197|gb|FG999438.1|FG999438
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|192315186|gb|FK010010.1|FK010010
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTTTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|8827780|gb|BE211510.1|BE211510
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|213614589|gb|DB969138.1|DB969138
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGG                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATA
EST: gi|298183805|gb|HO029018.1|HO029018
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
EST: gi|209715506|gb|BW682172.1|BW682172
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGT                         TTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTgtatgtaaca ... tcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactagttgaatgtatgaaacttggcaagttctcataatcaaatctcttctgcagTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGAGCTTCATGATTTGCTGAGCAAACCTTCATTGAGTGGCATCCCTTTGCTG
                                           tctcttctgc  CT-rich tract
                                  ataatcaaat  TA-rich tract