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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctctttcactccctcgcttcctcttttttttttttccaaaatagttttcgctttttttgttgttgttaattatgtgtgtgtgttttgggaaattggatggagtagCTACTATACGGCGCGGCTTTGGATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGT

Basic information

species Glycine max
transcript GLYMA01G39800.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 1
gttagtctctttcactccctcgcttcctcttttttttttttccaaaatagttttcgctttttttgttgttgttaattatgtgtgtgtgttttgggaaattggatggagtagCTACTATACGGCGCGGCTTTGGATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGT
                             |  | |  |||||||   || ||  || | |   |  |||    |  | | | | | | |  |   | || | ||   |||| || || ||  || |||||||||| || || || || || | |||||||||||| |||||| | || ||||||||||| |||||||| || |||  ||||
----------------------------gtaatctccttttcca---tatttcccgatctgggtcatgtaaagatgtctct-tttatatactattatatcgtattt-gtagGTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGT

upper sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
gttagtctctttcactccctcgcttcctcttttttttttttccaaaatagttttcgctttttttgttgttgttaattatgtgtgtgtgttttgggaaattggatggagtagCTACTATACGGCGCGGCTTTGGATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGT
                |||    ||||||   | ||||||| |   || |  |||  ||| |||  |||| ||        ||||    ||  ||   ||   |    ||| || || ||  || || |||||||||| || || || ||||  ||||| || ||||||||||||||||||||| |||| |||||||| |||||||| || 
-------------gtacccggtgttcctcccctcttttttttctcgattgcattcattttattt-ctgttctt--------gtgttgaattgaggtgcttcttt----tagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttgttgttgttaattatgtgtgtgtgttttgggaaattggatggagtagCTACTATACGGCGCGGCTTTGGATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGT
             tgttaat  putative branch site (score: 3)
         ttgttgttaattat  TA-rich tract