1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgttcagtgattccatcttatatgtgtatttaatgttattagcttgaaattaatggctttgattgattcattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGCTTGGGG
species | Glycine max |
transcript | GLYMA01G39460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|213590575|gb|DB973320.1|DB973320
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAANAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|7587911|gb|AW703717.1|AW703717
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|37995278|gb|CF806867.1|CF806867
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192302885|gb|FG998567.1|FG998567
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: GCTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|37995460|gb|CF807049.1|CF807049
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254334128|gb|GR849046.1|GR849046
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|6719430|gb|AW307077.1|AW307077
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: CTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|193535521|gb|FK492149.1|FK492149
genomic: CTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: GTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254344201|gb|GR855286.1|GR855286
genomic: GTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192319030|gb|FK006870.1|FK006870
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAAAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192302884|gb|FG998566.1|FG998566
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: GCTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254341478|gb|GR850691.1|GR850691
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254341479|gb|GR850692.1|GR850692
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|18734824|gb|BM528407.1|BM528407
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|15203964|gb|BI426741.1|BI426741
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192319031|gb|FK006871.1|FK006871
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAAAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254336450|gb|GR842629.1|GR842629
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192312912|gb|FK004054.1|FK004054
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAAAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254334127|gb|GR849045.1|GR849045
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|7591460|gb|AW707192.1|AW707192
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTANAGAC GAANAGAATAACGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192312913|gb|FK004055.1|FK004055
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAAAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|298174983|gb|HO017978.1|HO017978
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAGTAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254317284|gb|GR826229.1|GR826229
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|8401787|gb|BE057421.1|BE057421
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: TCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192299316|gb|FG990741.1|FG990741
genomic: TCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254336451|gb|GR842630.1|GR842630
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|209697719|gb|BW655620.1|BW655620
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192294842|gb|FG987531.1|FG987531
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGACTTCATCTATGTGGATGCTGATAAGGACEST: gi|37996206|gb|CF807795.1|CF807795
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|13252345|gb|BG363248.1|BG363248
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTEST: gi|254317493|gb|GR826477.1|GR826477
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCT
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|192298656|gb|FG988567.1|FG988567
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|254344202|gb|GR855287.1|GR855287
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACEST: gi|8283955|gb|BE021514.1|BE021514
genomic: ACTTCAGAGAAGGACCCGCTCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
EST: TCTTCCTCTTCTTGACGTTCTCATTAAAGAC GAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
genomic: TCTTCCTCTTCTTGACGTTCTCATTAAAGACgtgcgttcag ... cattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGAC
gtgtatttaatgttattagcttgaaattaatggctttgattgattcattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGCTTGGGG
tttaatgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttcagtgattccatcttatatgtgtatttaatgttattagcttgaaattaatggctttgattgattcattgtgcagGAAAAGAATAAGGGAGCTTTCGATTTCATCTATGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTGATTGAGCTTGTGAAGCTTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC