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gtaattagttcctctcatctttcaaatgctcatttgatacacccctatatcatttctatatgctatatcatgattttgatgactatctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG
species | Glycine max |
transcript | GLYMA01G39330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAG GGAGTACTATCAAGTGAGCATATTCTTGGTAATCGGACGCTGGAAGTCAAAEST: gi|192326076|gb|FK016228.1|FK016228
genomic: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGgtaattagtt ... ctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAA
EST: GTCTCGTGGTTTTGGATATGTTACATTTTGCTTCAGTGGATGATGCTAAG GAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAEST: gi|207728654|gb|GD705290.1|GD705290
genomic: GTCTCGTGGTTTTGGATATGTTACA-TTTGCTTCAGTGGATGATGCTAAGgtaattagtt ... ctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAA
EST: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAG GAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAEST: gi|254337733|gb|GR845303.1|GR845303
genomic: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGgtaattagtt ... ctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAA
EST: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAG GAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAA
genomic: GGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGgtaattagtt ... ctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAA
cccctatatcatttctatatgctatatcatgattttgatgactatctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG
ttttgat putative branch site (score: 4)
atatcatttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattagttcctctcatctttcaaatgctcatttgatacacccctatatcatttctatatgctatatcatgattttgatgactatctggctgcagGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG