1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctcttcatccatctttcctttgattcctgttatagtcatggaatgaagctcacatttgcctatttggtttcttttagGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
species | Glycine max |
transcript | GLYMA01G39190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGGG GCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGEST: gi|31462888|gb|CD404916.1|CD404916
genomic: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGgtctcttcat ... tttcttttagGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
EST: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAG GCTGAGATTCTTTCGAAGTACAAGCCTTATCATAAEST: gi|193404705|gb|FK369156.1|FK369156
genomic: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGgtctcttcat ... tttcttttagGCTGAGATTCTTTCGAAGTACAAGCCT-ATCATAA
EST: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAG GCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
genomic: CCAAGCTATTGAATGGAACGCACAAGGCTCATGTACACTCTGCAGAAGAGgtctcttcat ... tttcttttagGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTG
attcctgttatagtcatggaatgaagctcacatttgcctatttggtttcttttagGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
agctcac putative branch site (score: 3)
tttctttt putative PPT
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcttcatccatctttcctttgattcctgttatagtcatggaatgaagctcacatttgcctatttggtttcttttagGCTGAGATTCTTTCGAAGTACAAGCCTATCATAAATTCTACATCATTGCTGGATGACTTGAAAGATATGGAGATGAGATCTGCTAAGGCTTTAGAATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC