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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctaagatgtattgttttgttgctttctactttctttctataagtttgactgtggctcatgttatgctctattatgtgtgttctattgatgggacttttctgagtagtgagtttaatgtttttaccgtttctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 4
gtaaagctaagatgtattgttttgttgctttctactttctttctataagtttgactgtggctcatgttatgctctattatgtgtgttctattgatgggacttttctgagtagtgagtttaatgtttttaccgtttctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
             ||||||   | ||| | |  |||||          ||   | | |   ||  | |    |  ||||| ||  |  |||  ||   |        |  | ||| |||  | |   |    ||  | | ||  ||| |||  ||| || |  ||| |||| ||  | || ||||||||||| || ||||| |||||||||||||| ||||||||  |||| |||||| | ||  |
-------------gtattgaactattgatctgaactttt---------gtccaattattattc--gctgctttgcattatttggatcatatccatacaa--------accaatgattttttt-tgcatgtatttgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 4
gtaaagctaagatgtattgttttgttgctttctactttctttctataagtttgactgtggctcatgttatgctctattatgtgtgttctattgatgggacttttctg--agtagtgagtttaatgtttttac-cgttt-ctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
             ||||||   | ||| | |  |||||  | | || | | |  |  ||  |    ||||  |  || || |   | | |   |  |   |||| ||   ||| |   | |||| |||  |    |||  | | ||  ||| |||  ||| || |  ||| |||| ||  | || ||||||||||| || ||||| |||||||||||||| ||||||||  |||| |||||| | ||  |
-------------gtattgaactattgatctgaacttttgtccaattattatt-cgctgctttgcattat-ttggatcatatccatacaaaccaatgattttttttgcatgtatttgttgtaatttttgcatgtatttgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
-----------gtaaagctaagatgtattgttttgttgctttctactttctttctata-agtttgactgtggctcatgttatgctctatt--atgtgtgttctattgatgggacttt---tctgagtagt---gagtttaatgtttttaccgtttctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
            || | ||    || ||     | |||||||||   || |   |||  | ||| | ||       |||||  |  ||||  | |  |   || |||  |    |||   | | | | ||   |  ||||||||| | |  |  |||  | | ||||||||  |||||| |||||| ||||||| ||||| || ||| |||  |||||||| || |||||||||||||| |||||| |||||||||||||||||||
gcagggaacctctataactccc-tgaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgggacttttctgagtagtgagtttaatgtttttaccgtttctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT
                                tttttaccgtttctct  CT-rich tract
                       agtttaatgttttta  TA-rich tract