1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcaaactttaatccaaacatgcacttttgctgtgatgtgtcttgagatttgcttatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGACAAAATCCCCAAAA
species | Glycine max |
transcript | GLYMA01G36760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCEST: gi|15663346|gb|BI700717.1|BI700717
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACC
EST: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAACCAGCEST: gi|193696771|gb|FK637969.1|FK637969
genomic: TTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAACCAGC
EST: AGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG ATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACC
genomic: AGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAGgtaatttgct ... tgcttatcagATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACC
gagatttgcttatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGACAAAATCCCCAAAA
tgctgac putative branch site (score: 2)
ctctgctcttgctt putative PPT
ttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaaactttaatccaaacatgcacttttgctgtgatgtgtcttgagatttgcttatgaacttcctcttcttgctgacaactctgctcttgcttatcagATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGACAAAATCCCCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
-tgcaaac
- - - - - - - ccaaaca
- - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgct