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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcttatgacaataaactaaaaattatataatgaacctaacattaggaccttatataactaatggaataccatatagtataatagtatattctaatttattatatgtaacttcaaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGCGATGTGTCAAGATTCGTGCTAGGGTTAACAAGTTTTTTTGTAGTGGTGA

Basic information

species Glycine max
transcript GLYMA01G36590.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23053082|gb|BU577573.1|BU577573
EST:     ATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG                         ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
genomic: ATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
EST: gi|254314418|gb|GR832003.1|GR832003
EST:     CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG                         ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
genomic: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
EST: gi|192334352|gb|FK024423.1|FK024423
EST:     CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTG                         ATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC
genomic: CATGCTTATTTCCCATGGCCATTGGAGGCTATTGGGCCTATGGCCAATTGgtatgcatct ... aaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatatagtataatagtatattctaatttattatatgtaacttcaaatttacagATTCCTGCAAATGGAGGAATGCTCACTGCCCTATACCAATTCCACTCTCGCGATGTGTCAAGATTCGTGCTAGGGTTAACAAGTTTTTTTGTAGTGGTGA
     atagtataatagtata  TA-rich tract