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...ttttgaaatgttttatattttctctaaagctcaagctgtagcatcggttcttgccggatacatcttgcggttaagcttattttcagacttacatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCAATGTCTGCTATCAATATGGAATGGC
species | Glycine max |
transcript | GLYMA01G36030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAG GAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAEST: gi|9204548|gb|BE330772.1|BE330772
genomic: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAGgtagaatttt ... acatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACA
EST: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAG GAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAEST: gi|151396933|gb|EV266806.1|EV266806
genomic: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAGgtagaatttt ... acatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACA
EST: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAG GAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAEST: gi|207774233|gb|GD743691.1|GD743691
genomic: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAGgtagaatttt ... acatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACA
EST: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAG GAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACA
genomic: AAGGGCTCCCAAACACTTGGAAGGGCTAATAATGGGTGTCTGTTCTGCAGgtagaatttt ... acatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACA
ggttcttgccggatacatcttgcggttaagcttattttcagacttacatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCAATGTCTGCTATCAATATGGAATGGC
gacttac putative branch site (score: 2)
ttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaaatgttttatattttctctaaagctcaagctgtagcatcggttcttgccggatacatcttgcggttaagcttattttcagacttacatgaacagGAAATTTAGGAAACTTGCCTATAATCATTATCCCGGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCAATGTCTGCTATCAATATGGAATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA