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gtctttcccaccactcaacaatcttgtttttcctaatgaatccaacattttgtttaattctctaataagtgttgtgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCG
species | Glycine max |
transcript | GLYMA01G35480.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAG ATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATEST: gi|151394706|gb|EV264577.1|EV264577
genomic: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGgtctttccca ... tgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCAT
EST: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAG AATTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATEST: gi|13311486|gb|BG405137.1|BG405137
genomic: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGgtctttccca ... tgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCAT
EST: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAG ATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATEST: gi|213605459|gb|DB966952.1|DB966952
genomic: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGgtctttccca ... tgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCAT
EST: GCAAATTGCCTTTTCAGGAATTTTGAATAACAGGGCAATGTTTAATCCAG ATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCAT
genomic: GCAAATTGCCTTTTCAGGAATTTTGAACAACAGGGCAATGTTTAATCCAGgtctttccca ... tgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCAT
ttcctaatgaatccaacattttgtttaattctctaataagtgttgtgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCG
attttgtttaattctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttcccaccactcaacaatcttgtttttcctaatgaatccaacattttgtttaattctctaataagtgttgtgaattccagATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGTGATGGTTCGTCATTTACTGGTGATGTGGAAGCAGTGAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG