1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtaaaataaaacacatggtattggtgatttccaagttccaatcatgtccccccccaaatccccaatttttatgctaattctgcttcaggtttttgtatagATCTCTGAGCCACTGCGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCACCTCACTCACCGCTATGACAAACTTCATCAAGAGGTAGAAGCCC
species | Glycine max |
transcript | GLYMA01G35400.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
gtccccccccaaatccccaatttttatgctaattctgcttcaggtttttgtatagATCTCTGAGCCACTGCGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCACCTCACTCACCGCTATGACAAACTTCATCAAGAGGTAGAAGCCC
tgctaat putative branch site (score: 2)
tttttgt putative PPT
aatttttatgctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataaaacacatggtattggtgatttccaagttccaatcatgtccccccccaaatccccaatttttatgctaattctgcttcaggtttttgtatagATCTCTGAGCCACTGCGGGCACAGATAACAGGAGCTCCTTTGGAGGATGCACGCCACCTCACTCACCGCTATGACAAACTTCATCAAGAGGTAGAAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- aaaataa
- - - - -aacacat
- - - - - - - - - -attggtg
- - - - - - - - - - - - - - ttccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttc